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jhennies / amst

Alignment to Median Smoothed Template for FIB-SEM data
GNU General Public License v3.0
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Error while running AMST #10

Open rajlakshmi-sawale opened 1 year ago

rajlakshmi-sawale commented 1 year ago

Hi @jhennies,

I get this error when I try to execute AMST:

Traceback (most recent call last):
  File "C:\Users\au711234\~\amst\amst_win\example_usage.py", line 1, in <module>
    from amst.amst_main import amst_align, default_amst_params
  File "C:\Users\au711234\Anaconda3\envs\amst_env\lib\site-packages\amst\amst_main.py", line 9, in <module>
    from vigra import gaussianSmoothing
  File "C:\Users\au711234\Anaconda3\envs\amst_env\lib\site-packages\vigra\__init__.py", line 113, in <module>
    from . import vigranumpycore
ImportError: cannot import name 'vigranumpycore' from partially initialized module 'vigra' (most likely due to a circular import) (C:\Users\au711234\Anaconda3\envs\amst_env\lib\site-packages\vigra\__init__.py)

Can you please guide me on how to solve this issue?

Thanks! Rajlakshmi