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jhhung / PEAT

An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
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Support gzip input and output files #6

Closed tseemann closed 9 years ago

tseemann commented 9 years ago

Gzip compressed FASTQ files are standard everywhere.

It might be easy to support via Heng Li's KSEQ C module: http://lh3lh3.users.sourceforge.net/parsefastq.shtml

jhhung commented 9 years ago

Will think about it.

tseemann commented 9 years ago

@jhhung Can you simply just use the BOOST functions?

http://www.boost.org/doc/libs/1_43_0/libs/iostreams/doc/classes/gzip.html

RalfHsiao commented 9 years ago

We add this feature and update PEAT to 1.2 in release. Thank you your advice.