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jhkorhonen / MOODS

MOODS: Motif Occurrence Detection Suite
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P-value as score #18

Open iamjli opened 6 years ago

iamjli commented 6 years ago

Hi quick question, just wondering if it's possible to output p-value as column for motif matches. Right now I'm only seeing LOD score. Or is the best way to do this just to calculate a bunch of different thresholds for various p-values?

Thanks!

jhkorhonen commented 6 years ago

No. Computing the p-value from the score is unfortunately not very straightforward, so it would need some effort to do efficiently.

(In principle, it's implemented in the p-value from threshold code, but it would need to be tweaked to get all desired p-values out in a one go in some sane way.)