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jhofman / vbmod_python

python version of vbmod (variational bayes for network modularity)
http://vbmod.sf.net
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Weave Code Problems #2

Open DrSkippy opened 10 years ago

DrSkippy commented 10 years ago

Thanks for contributing your vbmod code.

After struggling with not making simple examples work, I uncommented the python code for Q updates used that instead of the weave (c) code. This was successful. I didn't completely debug the c code, but the weave version of updates appear to be independent of A doesn't give the same answer as the python version, so maybe something is missing?

I have done a few of your todos... breaking out vbmod as a module and separating tasks and the parts the require matplotlib and demonstrating with igraph as well as networkx. Take at look at my fork at https://github.com/DrSkippy/vbmod_python. I don't want to send a pull request unless you indicate since I made many changes to all parts of the code and removed the optimization code. (I am happy to add it back in if it can be debugged easily.)

Thanks again.

bisraelsen commented 9 years ago

I think I have the weave section working. It just needed to have the "estep_inline" function return the new Q.

Also, a lot of the code after was using Qmat. so I made Qmat = mat(Q) after the "estep_inline" function. That seems to get things working for me.