jhpoelen / bat-taxonomic-alignment

prototype focused on bat names
https://jhpoelen.nl/bat-taxonomic-alignment/
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use case: when "Thomas's fruit-eating bats" align with BTA_55@26d368c7 aka "Dermanura watsoni" by MDD #22

Open jhpoelen opened 1 year ago

jhpoelen commented 1 year ago

Note that BTA_55@25d368c7 can be expressed as

curl 'https://linker.bio/line:hash://sha256/26d368c772f240d65645248caa56dabae5cb2414ac57e8f0438d4c3dcf62e377!/L2,L55.tsv'\
 | mlr --itsvlite --oxtab cat

results in:

Name_MSW3                                    Artibeus watsoni
Name_HMW                                     Artibeus watsoni
Name_BatNames                                Dermanura watsoni
Name_MDD                                     Dermanura watsoni
Name_IUCN                                    Dermanura watsoni
Name_BatNames_2023                           Dermanura watsoni

name_MSW3                                    Artibeus incomitatus
name_HMW2019                                 Artibeus watsoni
name_batnames                                Dermanura watsoni
name_MDD                                     Dermanura watsoni
taxonomic_notes_concatenated                 HMW: Artibeus watson: Thomas, 1901 , “Bogava [= Bugaba,] Chiriqui , Panama . Altitude 250 m .” Artibeus watsoni is placed in Dermanura by some authors, but it was reassigned to Artibeus (subgenus Dermanura ) after reinterpretation of molecular results. Dermanura jucundum Elliot 1906 from Veracruz (S Mexico ) has been considered a synonym; A. incomitatus described by E. K. V. Kalko and C. O. Handley, Jr., 1994 from Isla Escudo ( Panama ) is molecularly the same as A. watson . Other authors also listed A. rosenbergi from north-western Ecuador as a synonym, but it is a distinct species based on molecular and morphological analyses. Monotypic. BatNames: Subgenus Dermanura . Distinct from glaucus ; see Handley (1987). Includes incomitata; see Solari et al(2008). MDD: includes incomitatus; moved to Dermanura from Artibeus, although some recent publications do not agree with this split, there seems to be more publications using this revised taxonomy rather than leaving all species under Artibeus IUCN: <p>Subgenus<span class="apple-converted-space">&#160; Dermanura . This subgenus has been recognized as a separate genus on molecular grounds, but there are no diagnostic morphological differences from<span class="apple-converted-space">&#160; Artibeus <span class="apple-converted-space"> &#160; (Lim<span class="apple-converted-space">&#160; et al .&#160;2004).</span></span></p> msw3: Subgenus Dermanura. Distinct from glaucus; see Handley (1987). See also Kalko and Handley (1994).
_2                                           
MDD_v1.10_in_review                          
_3                                           
no_match_MSW_HMW                             0
no_match_MSW_batnames                        1
no_match_MSW_MDD                             1
no_match_MSW_IUCN                            1
no_match_MSW_batnames2023                    1
no_match_HMW_batnames                        1
no_match_HMW_MDD                             1
no_match_HMW_IUCN                            1
no_match_HMW_batnames2023                    1
no_match_batnames_MDD                        0
no_match_batnames_IUCN                       0
no_match_batnames_batnames2023               0
no_match_MDD_IUCN                            0
no_match_MDD_batnames2023                    0
no_match_IUCN_batnames2023                   0
spelling                                     
_4                                           
Subspecies_MSW_interpreted                   
Synonym_MSW_interpreted                      jucundum
subspecies_HMW_interpreted                   
synonym_HMW_interpreted                      rosenbergi?, jucundum, incomitatus
subspecies_batnames_interpreted              
synonym_batnames_interpreted                 jucundum, incomitatus
synonym_MDD_interpreted                      watsoni, jucundum, incomitatus
_5                                           
name_GBIF                                    Artibeus watsoni
status_GBIF                                  ACCEPTED
rank_GBIF                                    SPECIES
_6                                           
docId                                        03A687BCFFEDFFEC168CF3F2FD87FB81
docOrigin                                    Handbook of the Mammals of the World – Volume 9 Bats, Barcelona: Lynx Edicions
docISBN                                      978-84-16728-19-0
docName                                      hbmw_9_Phyllostomidae_444.pdf.imf
docMasterId                                  hash://md5/ff9fffc4ffb1ffb1133cffbaffe0f244
docPageNumber                                576
derivedFrom                                  zip:hash://sha256/ec5fd314a06aba1a7b0b72f23e54ac625ae272bd98f82f1d01f4c09627d9e8e0!/treatments-xml-main/data/03/A6/87/03A687BCFFEDFFEC168CF3F2FD87FB81.xml
name_HMW                                     Artibeus watsoni
family_HMW                                   Phyllostomidae
interpretedGenus                             Artibeus
interpretedSpecies                           watsoni
interpretedAuthorityName                     Thomas
interpretedAuthorityYear                     1901
commonNames                                  Dermanure de Watson @fr | Thomas-Fruchtvampir @de | Artibeo de Watson @es | Watson's Fruit-eating Bat @en
taxonomy                                     Artibeus watson: Thomas, 1901 , “Bogava [= Bugaba,] Chiriqui , Panama . Altitude 250 m .” Artibeus watsoni is placed in Dermanura by some authors, but it was reassigned to Artibeus (subgenus Dermanura ) after reinterpretation of molecular results. Dermanura jucundum Elliot 1906 from Veracruz (S Mexico ) has been considered a synonym; A. incomitatus described by E. K. V. Kalko and C. O. Handley, Jr., 1994 from Isla Escudo ( Panama ) is molecularly the same as A. watson . Other authors also listed A. rosenbergi from north-western Ecuador as a synonym, but it is a distinct species based on molecular and morphological analyses. Monotypic.
subspeciesAndDistribution                    From S Mexico ( Veracruz ) through Central America (mainly in the Caribbean lowlands of Costa Rica ) to SE Panama . Records from NW South America would represent A. rosenbergi , which was thought to be part of this taxon.
descriptiveNotes                             Head-body 50-58 mm (tailless), ear 14-17 mm, hindfoot 8-12 mm, forearm 35-41 mm; weight 9-15-6 g. Thomas’s Fruit-eating Bat is small, with facial stripes and short broad rostrum. Dorsalfur is gray-brown or tan, long (6-7 mm), fluffy, and faintly tricolored. Rostrum has two well-marked white facial stripes, but supraocular is more evident than subocular. Ventralfur is slightly paler than dorsum. Ears and noseleaf are pale brown, and bases of ears are sometimes edged in white, cream, or rarely yellow. Horseshow of noseleafis free. Fur covers more than one-half of each forearm. Wing membranes are brownish, except for second interdigital membrane that lacks pigmentation. Tail membrane is pale brown, moderated in size (10-12 mm), U-shaped, and almost completely naked. Dental formulais12/2,C1/1,P2/2,M 2/3 ( x2 ) = 30. Skull has inflated frontal and supraorbital areas. Hypocone (talon) on M' is narrow, and M, is small, but it does not have defined cusps.
habitat                                      Common to abundant in semideciduous and evergreen lowlands forests, second growth, and fruit groves and also upland and swamp forests on islands from lowlands to elevations of ¢. 1500 m (usually below 800 m ). Thomas’s Fruit-eating Bat favors taller and more humid forests than the Pygmy Fruit-eating Bat (A. phaeotis ).
foodAndFeeding                               Thomas’s Fruit-eating Bat is mainly frugivorous and includes fruits of Ficus spp. ( Moraceae ), Cecropia spp. ( Urticaceae ), and Piper spp. ( Piperaceae ) in its diet.
breeding                                     Breeding pattern of Thomas's Fruit-eating Bat has been characterized as a bimodal polyestry. Most reproductive females were found in February and June but records include February-April,July-August, and November. Without exception, each gravid female had one embryo.
activityPatterns                             Thomas’s Fruit-eating Bats is nocturnal. It seems to be active at the first hour after sunset and again in early morning hours. It appears to be an obligate tent-maker because it has not been found roosting in other situations. For tents,it modifies leaves of Heliconia ( Heliconiaceae ), banana ( Musaceae ), bifid and palmate palm ( Anthurium , Araceae ), and species of Cyclanthaceae . Leaves are cut in a variety of styles, depending on shape and size. Individuals (usually males) occupying a tent roost make distinctive multiharmonic social call. These calls could help females find available roosts, or indicate presence of a male in the tent to other males.
movementsHomeRangeAndSocialOrganization      Thomas’s Fruit-eating Bat roost alone or form small groups. Variation in roost fidelity among males and females, and among individuals under different breeding conditions, depended on relative roost availability. In a fragmented landscape in Panama , home ranges of radio-tracked individuals varied widely from 1-8 ha to 17-9 ha (mean c.9 ha).
statusAndConservation                        Classified as Least Concern on The IUCN Red List (as Dermanura watsoni ). Thomas's Fruit-eating Bat has a wide distribution, is locally common, occurs in protected areas, and is tolerant of some degree of habitat modification, suggesting population stability.
bibliography                                 Albrecht et al. (2007) | Andersen (1908c) | Chaverri et al. (2007) | Davis (1970a) | Gillam et al. (2013) | Kalko & Handley (1994) | LaVal & Rodriguez-Herrera (2002) | Reid (2009) | Rodriguez-Herrera et al. (2007) | Stoner (2001) | Thomas (1897a, 1901a) | Timm (1987)
distributionImageURL                         https://zenodo.org/record/6458995/files/figure.png
verbatimText                                 200. Thomas's Fruit-eating Bat Artibeus watsoni French: Dermanure de Watson / German: Thomas-Fruchtvampir / Spanish: Artibeo de Watson Other common names: Watson's Fruit-eating Bat Taxonomy. Artibeus watson: Thomas, 1901 , “Bogava [= Bugaba,] Chiriqui , Panama . Altitude 250 m .” Artibeus watsoni is placed in Dermanura by some authors, but it was reassigned to Artibeus (subgenus Dermanura ) after reinterpretation of molecular results. Dermanura jucundum Elliot 1906 from Veracruz (S Mexico ) has been considered a synonym; A. incomitatus described by E. K. V. Kalko and C. O. Handley, Jr., 1994 from Isla Escudo ( Panama ) is molecularly the same as A. watson . Other authors also listed A. rosenbergi from north-western Ecuador as a synonym, but it is a distinct species based on molecular and morphological analyses. Monotypic. Distribution. From S Mexico ( Veracruz ) through Central America (mainly in the Caribbean lowlands of Costa Rica ) to SE Panama . Records from NW South America would represent A. rosenbergi , which was thought to be part of this taxon. Descriptive notes. Head-body 50-58 mm (tailless), ear 14-17 mm, hindfoot 8-12 mm, forearm 35-41 mm; weight 9-15-6 g. Thomas’s Fruit-eating Bat is small, with facial stripes and short broad rostrum. Dorsalfur is gray-brown or tan, long (6-7 mm), fluffy, and faintly tricolored. Rostrum has two well-marked white facial stripes, but supraocular is more evident than subocular. Ventralfur is slightly paler than dorsum. Ears and noseleaf are pale brown, and bases of ears are sometimes edged in white, cream, or rarely yellow. Horseshow of noseleafis free. Fur covers more than one-half of each forearm. Wing membranes are brownish, except for second interdigital membrane that lacks pigmentation. Tail membrane is pale brown, moderated in size (10-12 mm), U-shaped, and almost completely naked. Dental formulais12/2,C1/1,P2/2,M 2/3 ( x2 ) = 30. Skull has inflated frontal and supraorbital areas. Hypocone (talon) on M' is narrow, and M, is small, but it does not have defined cusps. Habitat. Common to abundant in semideciduous and evergreen lowlands forests, second growth, and fruit groves and also upland and swamp forests on islands from lowlands to elevations of ¢. 1500 m (usually below 800 m ). Thomas’s Fruit-eating Bat favors taller and more humid forests than the Pygmy Fruit-eating Bat (A. phaeotis ). Food and Feeding. Thomas’s Fruit-eating Bat is mainly frugivorous and includes fruits of Ficus spp. ( Moraceae ), Cecropia spp. ( Urticaceae ), and Piper spp. ( Piperaceae ) in its diet. Breeding. Breeding pattern of Thomas's Fruit-eating Bat has been characterized as a bimodal polyestry. Most reproductive females were found in February and June but records include February-April,July-August, and November. Without exception, each gravid female had one embryo. Activity patterns. Thomas’s Fruit-eating Bats is nocturnal. It seems to be active at the first hour after sunset and again in early morning hours. It appears to be an obligate tent-maker because it has not been found roosting in other situations. For tents,it modifies leaves of Heliconia ( Heliconiaceae ), banana ( Musaceae ), bifid and palmate palm ( Anthurium , Araceae ), and species of Cyclanthaceae . Leaves are cut in a variety of styles, depending on shape and size. Individuals (usually males) occupying a tent roost make distinctive multiharmonic social call. These calls could help females find available roosts, or indicate presence of a male in the tent to other males. Movements, Home range and Social organization. Thomas’s Fruit-eating Bat roost alone or form small groups. Variation in roost fidelity among males and females, and among individuals under different breeding conditions, depended on relative roost availability. In a fragmented landscape in Panama , home ranges of radio-tracked individuals varied widely from 1-8 ha to 17-9 ha (mean c.9 ha). Status and Conservation. Classified as Least Concern on The IUCN Red List (as Dermanura watsoni ). Thomas's Fruit-eating Bat has a wide distribution, is locally common, occurs in protected areas, and is tolerant of some degree of habitat modification, suggesting population stability. Bibliography. Albrecht et al. (2007), Andersen (1908c), Chaverri et al. (2007), Davis (1970a), Gillam et al. (2013), Kalko & Handley (1994), LaVal & Rodriguez-Herrera (2002), Reid (2009), Rodriguez-Herrera et al. (2007), Stoner (2001), Thomas (1897a, 1901a), Timm (1987).
docOrigin_2                                  Simmons, N.B. and A.L. Cirranello. 2022B. Bat Species of the World: A taxonomic and geographic database. Accessed on 10/11/2022.
family_batnames                              Phyllostomidae
name_batnames_2                              Dermanura watsoni
Genus                                        Dermanura
Subgenus                                     
Species                                      watsoni
Author                                       Thomas
Date                                         1901
Parentheses (1=author & date in parentheses) 1
Citation                                     Ann. Mag. Nat. Hist.
Pages                                        ser. 7, 7: 542
Common Name                                  Thomas' Fruit-eating Bat
Synonyms                                     <i>jucundum</i> Elliot, 1906; <i>incomitatus</i> Kalko and Handley 1994.
Type Locality                                Panama, Chiriquí, Bogava [Bugaba], 250 m.
Distribution                                 S Mexico to SW Colombia.
CITES                                        Not listed.
IUCN                                         Least Concern
Comments                                     Subgenus <i>Dermanura</i>.<i> </i>Distinct from <i>glaucus</i>; see Handley (1987). Includes <i>incomitata;</i> see Solari et al(2008).
source                                       GBIF Secretariat (2021). GBIF Backbone Taxonomy. Checklist dataset https://doi.org/10.15468/39omei accessed via GBIF.org on 2022-09-16.
verbatimScientificName                       Artibeus watsoni
sciname_GBIF                                 Artibeus watsoni Thomas, 1901
name_GBIF_2                                  Artibeus watsoni
key                                          4.00E+06
matchType                                    EXACT
confidence                                   99
status                                       ACCEPTED
rank                                         SPECIES
kingdom                                      Animalia
phylum                                       Chordata
class                                        Mammalia
order                                        Chiroptera
family_GBIF                                  Phyllostomidae
genus                                        Artibeus
species                                      Artibeus watsoni
canonicalName                                Artibeus watsoni
authorship                                   Thomas, 1901
docOrigin_3                                  Mammal Diversity Database. (2022). Mammal Diversity Database (Version 1.9.1) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.4139818
name_MDD_2                                   Dermanura watsoni
id                                           1.00E+06
phylosort                                    2.30E+01
mainCommonName                               Thomas's Fruit-eating Bat
otherCommonNames                             Watson's Fruit-eating Bat
subclass                                     Theria
infraclass                                   Placentalia
magnorder                                    Boreoeutheria
superorder                                   Laurasiatheria
order_2                                      CHIROPTERA
suborder                                     VESPERTILIONIFORMES
infraorder                                   NA
parvorder                                    NA
superfamily                                  NOCTILIONOIDEA
family_MDD                                   PHYLLOSTOMIDAE
subfamily                                    STENODERMATINAE
tribe                                        STENODERMATINI
genus_2                                      Dermanura
subgenus                                     NA
specificEpithet                              watsoni
authoritySpeciesAuthor                       O. Thomas
authoritySpeciesYear                         1901
authorityParentheses                         1
originalNameCombination                      Artibeus_Watsoni
authoritySpeciesCitation                     Thomas, O. (1901). New Myotis, Artibeus, Sylvilagus, and Metachirus from Central and South America. Annals and Magazine of Natural History, Ser. 7, 7, 542.
authoritySpeciesLink                         https://www.biodiversitylibrary.org/item/78511#page/572/mode/1up
holotypeVoucher                              BM 1900.7.11.19
holotypeVoucherURIs                          
typeLocality                                 "Bogava [= Bugaba,] Chiriqui, Panama. Altitude 250 m."
typeLocalityLatitude                         
typeLocalityLongitude                        
nominalNames                                 watsoni (O. Thomas, 1901)|jucundum D. G. Elliot, 1906|incomitatus (Kalko & Handley, 1994)
taxonomyNotes                                includes incomitatus; moved to Dermanura from Artibeus, although some recent publications do not agree with this split, there seems to be more publications using this revised taxonomy rather than leaving all species under Artibeus
taxonomyNotesCitation                        Hoofer, S. R., Solari, S., Larsen, P. A., Bradley, R. D., & Baker, R. J. (2008). Phylogenetics of the fruit-eating bats (Phyllostomidae: Artibeina) inferred from mitochondrial DNA sequences. Occasional Papers of the Museum of Texas Tech University, 277, 1-15.|Wilson D.E. & Mittermeier R.A. 2019. Handbook of the mammals of the world. Vol. 9. Bats. Lynx Edicions, Barcelona.|York, H. A., Rodríguez-Herrera, B., Laval, R. K., Timm, R. M., & Lindsay, K. E. (2019). Field key to the bats of Costa Rica and Nicaragua. Journal of Mammalogy, 100(6), 1726-1749.|Turcios-Casco, M. A., Ávila-Palma, H. D., LaVal, R. К., Stevens, R. D., Ordoñez-Trejo, E. J., Soler-Orellana, J. A., & Ordoñez-Mazier, D. I. (2020). A systematic revision of the bats (Chiroptera) of Honduras: an updated checklist with corroboration of historical specimens and new records. Zoosystematics and Evolution, 96, 411.|
countryDistribution                          Mexico|Guatemala|Belize|Honduras|Nicaragua|Costa Rica|Panama
continentDistribution                        North America
biogeographicRealm                           Nearctic|Neotropic
iucnStatus                                   LC
extinct                                      0
domestic                                     0
flagged                                      0
CMW_sciName                                  Artibeus_watsoni
diffSinceCMW                                 0
MSW3_matchtype                               oldname match
MSW3_sciName                                 Artibeus_watsoni
diffSinceMSW3                                0
docOrigin_4                                  IUCN. 2022. The IUCN Red List of Threatened Species. Version 2022-1. https://www.iucnredlist.org. Accessed on [28 September, 2022].
internalTaxonId                              1.00E+08
NAME_IUCN                                    Dermanura watsoni
kingdomName                                  ANIMALIA
phylumName                                   CHORDATA
className                                    MAMMALIA
orderName                                    CHIROPTERA
family_IUCN                                  PHYLLOSTOMIDAE
genusName                                    Dermanura
speciesName                                  watsoni
infraType                                    
infraName                                    
infraAuthority                               
subpopulationName                            
authority                                    (Thomas, 1901)
taxonomicNotes                               <p>Subgenus<span class="apple-converted-space">&#160;Dermanura</em>. This subgenus has been recognized as a separate genus on molecular grounds, but there are no diagnostic morphological differences from<span class="apple-converted-space">&#160;Artibeus</em><span class="apple-converted-space">&#160;</em>(Lim<span class="apple-converted-space">&#160;et al</em>.&#160;2004).</span></span></p>
assessmentId                                 2.00E+07
internalTaxonId_2                            1.00E+08
scientificName                               Dermanura watsoni
redlistCategory                              Least Concern
redlistCriteria                              
yearPublished                                2016
assessmentDate                               2016-07-05 00:00:00 UTC
criteriaVersion                              3.1
language                                     English
rationale                                    This species is listed as Least Concern in because of its wide distribution, presumed large population, occurrence in a number of protected areas, tolerance to some degree of habitat modification, and because it is unlikely to be declining at nearly the rate required to qualify for listing in a threatened category.
habitat_2                                    This bat is usually found below 800 m above sea level, in evergreen and semi-deciduous lowland forests, tolerates second growth and disturbed habitats. According to&#160;Kalko&#160;et al.</em>&#160;(1996) this small bat could be characterized as belonging to the&#160;Highly Cluttered Space/Gleaning Frugivores. Feeds on small figs, Cecropia </em>fruits, etc. Roosts in small colonies in leaf tents (LaVal and Rodriguez H. 2002). Reproduction seems to involve bimodal polyestry. <br/>It feeds primarily on fruits, although to a lesser extent may consume insects and pollen (LaVal and Rodrıguez-H. 2002).
threats                                      There are no threats for this species.
population                                   This species is common and abundant.
populationTrend                              Stable
range                                        This bat species is found from southern Mexico to southeastern Panama (Simmons 2005, Solari et al</em>. 2009). There are no verified record for El Salvador or Colombia (Owen and Giron 2012, Solari et al</em>. 2013).
useTrade                                     
systems                                      Terrestrial
conservationActions                          It is found in protected areas. In Mexico is listed as subject to special protection under NOM - 059 - SEMARNAT - 2001 (Arroyo-Cabrales pers. comm.).
realm                                        Neotropical
yearLastSeen                                 
possiblyExtinct                              FALSE
possiblyExtinctInTheWild                     FALSE
scopes                                       Global
docOrigin_5                                  Don E. Wilson & DeeAnn M. Reeder (editors). 2005. Mammal Species of the World. A Taxonomic and Geographic Reference (3rd ed), Johns Hopkins University Press, 2,142 pp. (Available from Johns Hopkins University Press, 1-800-537-5487 or (410) 516-6900, or at http://www.press.jhu.edu).
ORDER                                        CHIROPTERA
SUBORDER                                     
INFRAORDER                                   
SUPERFAMILY                                  
family_MSW3                                  Phyllostomidae
SUBFAMILY                                    Stenodermatinae
TRIBE                                        Stenodermatini
name_msw3                                    Artibeus watsoni
GENUS                                        Artibeus
SUBGENUS                                     Dermanura
SPECIES                                      watsoni
SUBSPECIES                                   
TAXON LEVEL                                  SPECIES
ORIGINAL NAME                                
VALID NAME (YES OR NO)                       YES
AUTHOR                                       Thomas
( )?                                         
DATE                                         1901
ACTUAL DATE?                                 
CITATION                                     Ann. Mag. Nat. Hist., ser. 7
VOLUME                                       7
ISSUE                                        
PAGES                                        542
CITATION TYPE                                
TYPE SPECIES                                 
COMMON NAME                                  Thomas's Fruit-eating Bat
TYPE LOCALITY                                Panama, Chiriquí, Bogava [Bugaba], 250 m.
DISTRIBUTION                                 S Mexico to SW Colombia.
STATUS                                       IUCN 2003 – Not listed (lapsus); IUCN/SSC Action Plan (2001) – Lower Risk (lc).
SYNONYMS                                     jucundum Elliot, 1906.
COMMENTS                                     Subgenus Dermanura. Distinct from glaucus; see Handley (1987). See also Kalko and Handley (1994).
family_batnames2023                          Phyllostomidae
GENUS_2                                      Dermanura
SUBGENUS_2                                   
SPECIES_2                                    watsoni
AUTHOR_2                                     Thomas
DATE_2                                       1901
PARENTHESES (1=AUTHOR & DATE IN PARENTHESES) 1
CITATION_2                                   Ann. Mag. Nat. Hist.
PAGES_2                                      ser. 7, 7: 542
COMMON NAME_2                                Thomas' Fruit-eating Bat
SYNONYMS_2                                   <i>jucundum</i> Elliot, 1906; <i>incomitatus</i> Kalko and Handley 1994.
TYPE LOCALITY_2                              Panama, Chiriquí, Bogava [Bugaba], 250 m.
DISTRIBUTION_2                               S Mexico to SW Colombia.
CITES_2                                      Not listed.
IUCN_2                                       Least Concern
COMMENTS                                     Subgenus <i>Dermanura</i>.<i> </i>Distinct from <i>glaucus</i>; see Handley (1987). Includes <i>incomitata;</i> see Solari et al(2008). 
jhpoelen commented 1 year ago

One possible method would be to select all BTA alignments that contain all of the following words matched in case-insensitive manner, and truncates the "bats" -> "bat", and "Thomas's" -> "Thomas"

  1. Thomas
  2. fruit
  3. eating
  4. bat

this can be implemented using the following script:

curl 'https://linker.bio/hash://sha256/26d368c772f240d65645248caa56dabae5cb2414ac57e8f0438d4c3dcf62e377'\
 | grep -i "Thomas"\
 | grep -i "fruit"\
 | grep -i "eating"\
 | grep -i "bat" 

this results in 27 hits, including 2 hits what mention "Dermanura watsoni" .

jhpoelen commented 1 year ago

@ajacsherman comments that many of the synonymized name combination may not appear in the BTA@26d368c7 .

For instance, in some of the records, abbreviated names (e.g., D. watsoni), or alternative names are mentioned.

Because BTA does not explicitly mention these variation, a new, handcurated column may be needed to explicitly relate all the known alternative names associated with a published BTA concept.

For instance, we'd want to have an association that claims:

alternative name relationType BTA concept accordingTo accordingToDate accordingToSource
D. watsoni abbreviationOf BTA_55@26d368c7 AC Sherman 2023-08-15 MDD
Thomas's fruit-wating bats commonNameOf BTA_55@26d368c7 AC Sherman 2023-08-15 MDD