jhpoelen / effechecka

create taxonomic checklists and monitor biodiversity data access
MIT License
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Documenting data issues: genus and species not parsed #88

Open diatomsRcool opened 6 years ago

diatomsRcool commented 6 years ago

There are times in the pipe-delimited classification, when the genus and specific epithet are not parsed separately. Using this query curl -o checklist/1904.tsv "http://api.effechecka.org/checklist.tsv?wktString=POLYGON((51.415%2010.445%2C%2095.214%205.304%2C%2095.602%204.623%2C%2096.324%203.938%2C%2097.162%203.272%2C%2097.695%202.364%2C%2097.825%202.759%2C%2097.84%202.275%2C%2098.534%201.915%2C%2098.765%201.493%2C%2099.056%200.64%2C%2099.496%200.127%2C%2099.978%20-0.451%2C%20100.376%20-1.149%2C%20100.812%20-1.846%2C%20101.305%20-2.721%2C%20101.973%20-3.498%2C%20102.392%20-4.052%2C%20103.252%20-4.662%2C%20103.93%20-5.15%2C%20104.492%20-5.802%2C%20105.95%20-6.813%2C%20106.384%20-7.237%2C%20107.504%20-7.537%2C%20108.424%20-7.821%2C%20108.96%20-7.696%2C%20109.19%20-7.54%2C%20109.928%20-7.86%2C%20110.679%20-8.184%2C%20111.388%20-8.274%2C%20111.774%20-8.281%2C%20112.522%20-8.401%2C%20113.283%20-8.294%2C%20113.85%20-8.552%2C%20114.458%20-8.757%2C%20116.307%20-8.907%2C%20116.854%20-9.05%2C%20117.799%20-8.905%2C%20118.421%20-8.685%2C%20119.49%20-9.752%2C%20120.084%20-10.167%2C%20126.238%20-14.186%2C%20125.409%20-14.545%2C%20125.108%20-15.264%2C%20124.544%20-16.211%2C%20123.568%20-16.187%2C%20123.487%20-17.398%2C%20121.001%20-19.607%2C%20116.354%20-20.842%2C%20113.647%20-24.88%2C%20113.325%20-26.227%2C%20115.106%20-33.604%2C%20146.887%20-55.054%2C%2020.843%20-34.397%2C%2028.645%20-32.439%2C%2032.63%20-27.708%2C%2048.028%20-22.124%2C%2049.679%20-15.785%2C%2049.196%20-12.291%2C%2039.568%20-9.092%2C%2039.398%20-6.855%2C%2040.166%20-2.96%2C%2044.237%201.301%2C%2051.415%2010.445))"

I get the following examples Brachyplatys testudonigra De Geer, 1835 Animalia|Arthropoda|Insecta|Hemiptera||Brachyplatys testudonigra|testudonigra|Brachyplatys testudonigra De Geer, 1835 11

Coridius nubilus Westwood, 1807 Animalia|Arthropoda|Insecta|Hemiptera|Dinidoridae|Coridius nubilus|nubilus|Coridius nubilus Westwood, 1807 10

Ectrichodia crux Thunberg, 1825 Animalia|Arthropoda|Insecta|Hemiptera||Ectrichodia crux|crux|Ectrichodia crux Thunberg, 1825 10

Plea pullata Stal Animalia|Arthropoda|Insecta|Hemiptera|Pleidae|Plea pullata|pullata|Plea pullata Stal 10

Anisops gracilis Hutchinson Animalia|Arthropoda|Insecta|Hemiptera|Notonectidae|Anisops gracilis|gracilis|Anisops gracilis Hutchinson 10

Dorycoris pavonius Westwood, 1864 Animalia|Arthropoda|Insecta|Hemiptera|Pentatomidae|Dorycoris pavonius|pavonius|Dorycoris pavonius Westwood, 1864 9