jhu-bids / TermHub

Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7
https://bit.ly/termhub
GNU General Public License v3.0
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First sprint for first presentation to Infrastructure call #111

Closed Sigfried closed 1 year ago

Sigfried commented 2 years ago

Sprint 1 decided

Candidates for sprint 1

As of 2022-09-22: image

Marking up this image of where TermHub CSet Comparison stands as of 2022-09-20:

A week earlier: 2021-02-10-study3-design-sketches-5

joeflack4 commented 2 years ago

Oh wow, lots of detail. Can discuss more tomorrow.

If they don't find this table as useful as another type of visualization (e.g. a tree), than some of these improvements will be moot. But I do like these suggestions.

Sigfried commented 2 years ago

The new data structure should be easier to work with. http://127.0.0.1:8000/cr-hierarchy?codeset_id=818292046|484619125|400614256

[
  {
    "concept_id": 317009,
    "concept_name": "Asthma",
    "level": 0,
    "parent": -1
  },
  {
    "concept_id": 4119298,
    "concept_name": "Late onset asthma",
    "level": 1,
    "parent": 317009
  },
  ...

Partly because it's more flexible than the one we're using now, I think

hugwuoke commented 1 year ago

@joeflack4 This might be ready to close as well.

joeflack4 commented 1 year ago

I think you're right. Even though some unclosed sub-issues, this 'first sprint' is long completed, and much has changed since. I forgot that I wrote that initial page with all the X's and O's, lol.