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jhu-bids / TermHub

Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7
https://bit.ly/termhub
GNU General Public License v3.0
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quick prototype: get mappings from OMOP vocab table and have user correct them #145

Open joeflack4 opened 1 year ago

joeflack4 commented 1 year ago

Overview

I believe this idea was partially Chris's? Maybe.

Siggie said:

one way that termhub can help is to propose the automated mapping, show the user what was created, and allow the user to review.

Related

https://github.com/jhu-bids/TermHub/issues/140: Some of these that Stephanie is working on could be further curated by loading into TermHub.

stephanieshong commented 1 year ago

@joeflack4 - how is this different from #140?

joeflack4 commented 1 year ago

I think per @Sigfried's idea, this would involve (i) automated mappings, and (ii) a web UI where the user can approve / disapprove.

But this isn't a well-specified issue, I don't think. And I'm not sure what/when we have time for. This was something that came up rather briefly at one of our Wednesday meetings.

stephanieshong commented 1 year ago

Ah, now I remember. This is what I suggested to Siggie that this feature should be added to TermHub. From the UI perspective, display the descendants where user can de-select the included concepts, which resulted from the includeDescendants.