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jhu-bids / TermHub

Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7
https://bit.ly/termhub
GNU General Public License v3.0
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Bug: csets not expanding #903

Closed joeflack4 closed 1 month ago

joeflack4 commented 1 month ago

Overview

Siggie was uploading some csets using the API. It passed on the validate step, but failed on apply. (slack).

Afterwards, the fetch_failures_0_members script started to fail; it couldn't find expansions for these finalized csets, even though they have valid expressions.

Sub-tasks

1. Fix issue

Possible solutions:

  1. Enclave support? It's possible that this might be a problem that they can only solve on the Enclave-side.
    • Seemed like it. resolved on its own in about 24 hours
  2. Illegal concepts?
    • No. Did analysis #902 and none of the expresssions, at least, included deleted concepts.

2. Address currently broken csets

When Enclave issues are fixed: a. Delete existing ones and upload anew b. Possible to fix existing ones?

Temporary solution for fetch_failures_0_members? a. Just ignore instead of throw err every 20 min?

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