Check for sequencer-derived files on bookmark screen

jhuapl-bio / Basestack

Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later

https://basestackwebsite.readthedocs.io/en/latest/

GNU General Public License v3.0

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Check for sequencer-derived files on bookmark screen #32

Closed tmehoke closed 3 years ago

tmehoke commented 3 years ago

Files currently needed:

sequencing_summary_*.txt # for nanopolish
  throughput_*.csv # for report
  drift_correction_*.csv # for report

Asterisks here represent run-specific characters (e.g. the flowcell ID).

tmehoke commented 3 years ago

minor update request - can these two files be warnings if not present but still allow the pipeline to proceed?

throughput_*.csv # for report
drift_correction_*.csv # for report

Merritt-Brian commented 3 years ago

Resolved in #52 , staged for v0.8.4

Merritt-Brian commented 3 years ago

Resolved in #56 in final upgrade to v0.8.4