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jhuapl-bio / Basestack

Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later
https://basestackwebsite.readthedocs.io/en/latest/
GNU General Public License v3.0
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meta/run_config.txt not receiving final newline #35

Closed tmehoke closed 3 years ago

tmehoke commented 3 years ago

data/userdata/basestack_consensus/histories/<bookmark-name>/meta/run_config.txt has a third line not terminated by a newline - this causes R to throw an error when trying to read it for the report

tmehoke commented 3 years ago

With additional testing, both run_config.txt and run_info.txt have the final newline in the run folder. Both run_info.txt and run_config.txt end up missing their final newline, and this occurs in both the meta folder, and the original run_config.txt and run_info.txt in the run folder are overwritten to be missing the final newline.

Merritt-Brian commented 3 years ago

Completed in #56, closing issue