spades hmm and paired illumina fixes

jhuapl-bio / taxtriage

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

MIT License

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spades hmm and paired illumina fixes #11

Closed tasapl closed 1 year ago

tasapl commented 1 year ago

Contains changes to allow users to add hmm file for spades
Includes FILTER_PAIRED process to filter illumina paired bam files (implementation not complete)

Merritt-Brian commented 1 year ago

Closed independently in main, merged