TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
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Stats and Assembly Runs only on LCA Species Level from Kraken2 filtered reads #17
Description of the bug
Currently, the confidences are only run on the reads alignments that are assigned to the species or subspecies level
Command used and terminal output
No response
Relevant files
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System information
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