TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
Previously, BLAST was functional at the end of the pipeline (post top hits/re-alignment) but computationally expensive. Consider automated subsampling by hit-type and diversity of sequences for tuning purposes on final reporting metrics.
Description of feature
Previously, BLAST was functional at the end of the pipeline (post top hits/re-alignment) but computationally expensive. Consider automated subsampling by hit-type and diversity of sequences for tuning purposes on final reporting metrics.