TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
MIT License
18
stars
4
forks
source link
Aggregate Multi Contig/Accession/Chromosome Stats per Sample & Taxa #41
Currently, the final confidences are reported per alignment stat for all references for a given sample and taxa. We need to aggregate and generate stats (like breadth of coverage, depth, etc.) for a given taxa, including stats across all reference from alignment
Description of feature
Currently, the final confidences are reported per alignment stat for all references for a given sample and taxa. We need to aggregate and generate stats (like breadth of coverage, depth, etc.) for a given taxa, including stats across all reference from alignment