TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
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There are log of warning and channel.view() lines that get printed to the screen while running. #44
Kelly asked me to try this workflow on some metagenomic samples that we recently sequenced. The test ran okay, but it seems there are several *.view() statements and other irregularities that get printed to the screen.
Also, I'm unsure what usage to use. I currently have something running, but I thought I would share one of the warning messages that gets printed to the screen.
Command used and terminal output
WARN: Access to undefined parameter `skip_assembly` -- Initialise it to a default value eg. `params.skip_assembly = some_value`
Description of the bug
Kelly asked me to try this workflow on some metagenomic samples that we recently sequenced. The test ran okay, but it seems there are several
*.view()
statements and other irregularities that get printed to the screen.Also, I'm unsure what usage to use. I currently have something running, but I thought I would share one of the warning messages that gets printed to the screen.
Command used and terminal output
Relevant files
No response
System information
No response