Add Minmapq filter to samtools

jhuapl-bio / taxtriage

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

MIT License

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Add Minmapq filter to samtools #47

Closed Merritt-Brian closed 7 months ago

Merritt-Brian commented 7 months ago

Description of feature

Post-alignment, implement minmapq for minmap2 and bowtie2 BAM files before sorting

Merritt-Brian commented 7 months ago

added with --minmapq param