Remove the split VCF by contig

jhuapl-bio / taxtriage

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

MIT License

18 stars 4 forks source link

Remove the split VCF by contig #49

Closed Merritt-Brian closed 7 months ago

Merritt-Brian commented 7 months ago

Description of feature

If you get VCF stats for scaffolds (usually 80+ accessions) this part becomes unwieldy. Remove it entirely for now as it is not necessary in general