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jiabowang / GAPIT

Genome Association Predict Integrate Tools
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Stuck in [1] "GAPIT.RandomModel beginning..." [1] FALSE #140

Open YangZituo opened 1 month ago

YangZituo commented 1 month ago

Hi, I run GAPIT to do GLM model. "myGAPIT <- GAPIT( Y=myY[,c(1,2)], GD=myGD, GM=myGM, PCA.total=3, model="GLM", )"

The MLM model can run but the GLM model stuck in one step. [1] "GAPIT before BLUP and BLUE" [1] "GAPIT after BLUP and BLUE" [1] "Exporting BLUP and Pred" [1] "GLM.Salt_start5 has been analyzed successfully!" [1] "The results are saved in the directory of C:/Users/zituo/Desktop/hybrid" [1] "before ending GAPIT.Main" [1] "GAPIT.RandomModel beginning..." [1] FALSE

And then it stuck and no move. Could you help it?

jiabowang commented 2 weeks ago

The number of significant markers in your GLM is very large value. So the random model can not hold these variables. Please try other model or use Random.model=FASLE in your command line.