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jianhong / ATACseqQC

ATAC-seq Quality Control
https://jianhong.github.io/ATACseqQC/articles/ATACseqQC.html
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inconsistencies between the package code and user guide #33

Closed tinavisnovska closed 3 years ago

tinavisnovska commented 4 years ago

Hi,

1) In the guide's section 2.4.4 (Transcription Start Site (TSS) Enrichment Score): function TSSEscore returns $TSSEscore and $values, however, today's version of the function does not return them.

2) In the guide's section 2.5 (plot footprints): function featureAlignedHeatmap is used, while there is not such function available in the today's version of the package.

Anyway, thanks for providing the package!

jianhong commented 3 years ago

featureAlignedHeatmap is a function in ChIPpeakAnno. This inconsistence of package and vignette is caused by the lags of bioconductor building. It should fixed automatically once the bioconductor rebuild the package.