plot correlation is not symmetric

jianhong / ATACseqQC

ATAC-seq Quality Control

https://jianhong.github.io/ATACseqQC/articles/ATACseqQC.html

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plot correlation is not symmetric #35

Closed noorisotoudeh closed 3 years ago

noorisotoudeh commented 3 years ago

Hi Jianhong, I used plotCorrelation to find out that which of the bam files is highly different from others but surprisingly the out put is not symmetric. I mean as the picture below shows for instance for input6-input5 there is two different colors (one of them is darker). can you please tell me what is wrong? thanks Noori

jianhong commented 3 years ago

Hi Noori,

Thank you for reporting that. The heatmap is rescaled by row. now I fixed this bug by remove the rescale.

Jianhong.