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jianhong / ChIPpeakAnno

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minor fixes for 3.36.0 #39

Closed hukai916 closed 5 months ago

hukai916 commented 5 months ago

Fix the "R CMD check" failed issues:

  1. Caused by seqlevelsStyle() function not fully ready in BioC 3.18, check: (https://support.bioconductor.org/p/9156488/). This will not be a concern for the ChIPpeakAnno dev version since seqlevelsStyle() will be patched soon.
  2. Fixed another minor bug that is already patched in the dev version for annoGR.R.
  3. Bumped version to 3.36.1 and rerun roxygenize() to update the documentations.
jianhong commented 5 months ago

Hi @hukai916 Kai, When I check it on local, I got error:

E creating vignettes (3m 43.9s) --- re-building ‘ChIPpeakAnno.Rmd’ using rmarkdown --- finished re-building ‘ChIPpeakAnno.Rmd’

--- re-building ‘FAQs.Rmd’ using rmarkdown --- finished re-building ‘FAQs.Rmd’

--- re-building ‘pipeline.Rmd’ using rmarkdown

Quitting from lines 154-167 [workflow3] (pipeline.Rmd) Error: processing vignette 'pipeline.Rmd' failed with diagnostics: found no sequence renaming map compatible with seqname style "Ensembl" for this object --- failed re-building ‘pipeline.Rmd’

--- re-building ‘quickStart.Rmd’ using rmarkdown

Quitting from lines 65-72 [annotate] (quickStart.Rmd) Error: processing vignette 'quickStart.Rmd' failed with diagnostics: found no sequence renaming map compatible with seqname style "Ensembl" for this object --- failed re-building ‘quickStart.Rmd’

I think you may want to take a deeper look.