jianhuupenn / SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
MIT License
199 stars 60 forks source link

How to use functions Moran_I and Geary_C ? #39

Closed QingJun3 closed 2 years ago

QingJun3 commented 2 years ago

I see functions Moran_I and Geary_C in calculate_moran_I.py. But I don't see how to use them in tutorial. I also don't see any comments

jianhuupenn commented 2 years ago

These two functions are used for internal evaluation, so not mentioned in the tutorial. They are implemented based on their definition from Wiki.