how to use detect_spatial_domains_ez_mode without histology image

jianhuupenn / SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

MIT License

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how to use detect_spatial_domains_ez_mode without histology image #51

Closed linpei26 closed 1 year ago

linpei26 commented 1 year ago

Hi Dr. Hu!

I am reading the SpaGCN Easy Mode Tutorial and I wish to know how to use the function "detect_spatial_domains_ez_mode" if users do not have a histology image?

Thanks!

Pei

linpei26 commented 1 year ago

Is it oK to set histology = False and provide "" as the argument "img" when calling detect_spatial_domains_ez_mode? Thanks.

jianhuupenn commented 1 year ago

Yes. That should work.