SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
We are doing a similar study to SpaGCN and trying to compare it in our experimental results. But for all our brains and efforts, we couldn't find the SLIDE-seqV2 data that SpaGCN used. Is it convenient for you to provide the SLIDE-SeqV2 data used by SpaGCN?
Hello,
We are doing a similar study to SpaGCN and trying to compare it in our experimental results. But for all our brains and efforts, we couldn't find the SLIDE-seqV2 data that SpaGCN used. Is it convenient for you to provide the SLIDE-SeqV2 data used by SpaGCN?
The information about this data is presented in Supplementary Table 1 as follows: " Species：Mouse. Tissue: Contex. Data Source: Stickels, R.R., et al. [3] (https://singlecell.broadinstitute.org/single_cell/study/SCP815/highly-sensitive-spatial-transcriptomics-at-near-cellular-resolution-with-slideseqv2#study-summary) Dimensions: 2560 spots and 22683 genes. Protocol: SLIDE-seqV2. "
Thanks