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jianhuupenn / SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
MIT License
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Variable names are not unique. #73

Open Listen-lei opened 1 year ago

Listen-lei commented 1 year ago

In the first code block in 3.read in data, there is the following error: Variable names are not unique. To make them unique, call .var_names_make_unique. Variable names are not unique. To make them unique, call .var_names_make_unique. ... storing 'feature_types' as categorical ... storing 'genome' as categorical. I followed the tutorial but it still happened, I would like to ask why this problem occurs

Listen-lei commented 1 year ago

image

As shown in the picture, this location should obviously have some content, but it is now empty, which I suspect is due to the above problem