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jiarong / VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data
GNU General Public License v2.0
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[Feature] pyhmmer #109

Closed alienzj closed 2 years ago

alienzj commented 2 years ago

Dear @jiarong, do you have any plan to use pyhmmer instead of hmmer ? Based on the pyhmmer documentations, when we increase the number of CPU, the speed of hmmsearch will more fast.

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jiarong commented 2 years ago

Thanks for the suggest. I will take a look, but this is low priority. As mentioned in #53, better parallelism can be achieved by simply splitting the input contig file.