wrong in run virSorter2

[xiaozhangzhang123]

I tried to run Virsorter2 but I got the following error message:

.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.497.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.420.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.360.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.826.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.649.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.594.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.915.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.745.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.750.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.845.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.41.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.838.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.324.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.150.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.34.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.524.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.586.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.51.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.392.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.713.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.104.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.48.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.16.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.686.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.50.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.121.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.502.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.100.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.537.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.464.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.159.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.663.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.462.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.774.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.93.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.116.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.451.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.557.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.933.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.849.split | xargs rm -f

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Exiting because a job execution failed. Look above for error message

[jiarong]

Hi, what operating system are you using? can you paste the whole message from virsorter2?

[xiaozhangzhang123]

I used linux system. How can I paste the whole message from virsort2?

------------------ 原始邮件 ------------------ 发件人: "jiarong/VirSorter2" @.>; 发送时间: 2022年7月24日(星期天) 上午7:55 @.>; @.**@.>; 主题: Re: [jiarong/VirSorter2] wrong in run virSorter2 (Issue #116)

Hi, what operating system are you using? can you paste the whole message from virsorter2?

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

[jiarong]

You can copy the messages that VirSorter2 prints to the screen, and paste them here.

[XiaominWang12]

Hi, I met the same error

.../pp-linear.fna.13.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.573.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.713.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.497.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.548.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.70.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.763.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.68.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.914.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.519.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.627.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.404.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.101.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.521.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.233.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.479.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.243.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.370.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.800.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.264.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.266.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.56.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.132.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.447.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.810.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.9.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.109.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.631.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.409.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.635.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.304.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.39.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.840.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.192.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.542.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.104.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.273.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.364.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.294.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.563.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.879.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.839.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.890.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.401.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.321.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.176.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.85.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.477.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.0.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.702.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.615.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.186.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.418.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.209.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.769.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.79.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.770.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.808.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.45.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.28.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.86.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.413.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.67.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.726.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.549.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.288.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.228.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.624.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.379.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.284.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.96.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.333.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.143.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.501.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.532.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.206.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.272.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.25.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.701.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.670.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.644.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.560.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.300.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.642.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.405.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.643.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.247.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.172.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.343.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.796.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.30.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.724.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.148.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.75.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.329.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.956.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.458.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.523.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.248.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.591.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.809.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.8.split.pdg.splitfaa 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iter-0/pp-linear.fna.splitdir/pp-linear.fna.742.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.735.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.694.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.207.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.745.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.866.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.252.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.331.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.689.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.634.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.787.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.177.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.746.split.pdg.splitfaa iter-0/pp-linear.fna.splitdir/pp-linear.fna.597.split.pdg.splitfaa 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iter-0/pp-linear.fna.splitdir/pp-linear.fna.197.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.504.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.857.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.454.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.576.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.927.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.730.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.976.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.727.split | xargs rm -f

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message

*** An error occurred. Detailed errors may not be printed for certain rules. Refer to the log file of the failed command for troubleshooting Issues can be raised at: https://github.com/jiarong/VirSorter2/issues Or send an email to virsorter2 near gmail.com if you do not use GitHub