Error - Githubissues

Hello, Not sure what is going on with this error, but here is the error: [2023-05-01 16:03 ERROR] See error details in /home/nolin/SPOTV_quals_subset/13_Viral_Contigs/VirSorter2-nolin/log/iter-0/step3-classify/provirus-score-merge.log [Mon May 1 16:03:43 2023] Error in rule merge_provirus_call_from_groups: jobid: 21 output: iter-0/viral.partseq.tsv.tmp, iter-0/viral.fullseq.tsv.tmp conda-env: /home/nolin/software/db/conda_envs/9abeeeb5 shell:

        Log=/home/nolin/SPOTV_quals_subset/13_Viral_Contigs/VirSorter2-nolin/log/iter-0/step3-classify/provirus-score-merge.log
        python /home/nolin/miniconda3/envs/vs2/lib/python3.10/site-packages/virsorter/./scripts/merge-provirus-from-groups.py iter-0/dsDNAphage/all.pdg.prv.bdy,iter-0/ssDNA/all.pdg.prv.bdy dsDNAphage,ssDNA iter-0/viral.partseq.tsv.tmp iter-0/viral.fullseq.tsv.tmp 2> $Log || { echo "See error details in $Log" | python /home/nolin/miniconda3/envs/vs2/lib/python3.10/site-packages/virsorter/./scripts/echo.py --level error; exit 1; }

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Exiting because a job execution failed. Look above for error message

And here is the log:

(base) nolin@ada:~/SPOTV_quals_subset$ more /home/nolin/SPOTV_quals_subset/13_Viral_Contigs/VirSorter2-nolin/log/iter-0/step3-classify/provirus-score-merge.log Traceback (most recent call last): File "/home/nolin/miniconda3/envs/vs2/lib/python3.10/site-packages/virsorter/./scripts/merge-provirus-from-groups.py", line 123, in main() File "/home/nolin/miniconda3/envs/vs2/lib/python3.10/site-packages/virsorter/./scripts/merge-provirus-from-groups.py", line 38, in main seqnames = [name.rsplit('||', 1)[0] for name in df['seqname']] File "/home/nolin/miniconda3/envs/vs2/lib/python3.10/site-packages/virsorter/./scripts/merge-provirus-from-groups.py", line 38, in seqnames = [name.rsplit('||', 1)[0] for name in df['seqname']] AttributeError: 'float' object has no attribute 'rsplit'

jiarong / VirSorter2

Error #160