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jiarong / VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data
GNU General Public License v2.0
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Error:Duplicate seqname detected in .../....fna,Please make sure all sequence names are unique.. #184

Closed eiko33 closed 11 months ago

eiko33 commented 12 months ago

Hello, I tried to run Virsorter2 but I got the following error message: Duplicate seqname detected in /.fna; Please make sure all sequence names are unique.. I used the seqkit software and the uniq command to remove adjacent duplicate rows, trying to retain only the first occurrence of the gene sequence name, but both software showed no duplicate results for either IDs or sequences, and still could not run the program properly.Thank you for your help!

eiko33 commented 12 months ago

![Uploading 6283d52acd540644f584fbaadac9214.png…]()

jiarong commented 11 months ago

Hi, the way I usually recommend to deal with duplicate names is just to rename the sequence name/ID.