jiarong / VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data
GNU General Public License v2.0
225 stars 31 forks source link

An error #211

Open baidefeng opened 4 months ago

baidefeng commented 4 months ago

Hi, when i run virsorter, an error occurred. Do you have ideas how to fix it? Thank you.

er-0/pp-linear.fna.splitdir/pp-linear.fna.184.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.287.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.419.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.614.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.638.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.879.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.253.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.441.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.860.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.818.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.668.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.865.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.492.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.85.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.153.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.577.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.897.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.32.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.121.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.212.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.792.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.878.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.917.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.622.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.857.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.783.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.432.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.182.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.113.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.372.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.773.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.513.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.826.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.79.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.760.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.204.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.129.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.593.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.26.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.460.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.998.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.404.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.16.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.436.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.560.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.140.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.807.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.609.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.966.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.677.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.2.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.170.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.990.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.562.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.122.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.819.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.522.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.297.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.711.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.886.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.509.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.672.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.21.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.191.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.118.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.602.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.859.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.14.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.981.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.545.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.251.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.4.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.400.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.615.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.754.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.961.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.861.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.650.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.78.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.732.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.29.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.964.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.62.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.840.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.1.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.873.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.444.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.839.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.252.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.801.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.877.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.935.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.420.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.951.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.553.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.227.split iter-0/pp-linear.fna.splitdir/pp-linear.fna.181.split | xargs rm -f

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Exiting because a job execution failed. Look above for error message

*** An error occurred. Detailed errors may not be printed for certain rules. Refer to the log file of the failed command for troubleshooting Issues can be raised at: https://github.com/jiarong/VirSorter2/issues Or send an email to virsorter2 near gmail.com if you do not use GitHub

jiarong commented 4 months ago

Hi, can you paste the whole message printed to screen by VirSorter2? Thanks!