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jiaxuanleong / SPIRO.Assays

ImageJ macros written to analyse data acquired by SPIRO imaging
BSD 2-Clause "Simplified" License
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Problem with choose.dir() on Windows #25

Closed KlMichel closed 3 months ago

KlMichel commented 3 months ago

Hello, I do not have much experience in R, but with the fantastic SPIRO Assays manual, I have managed to install everything and get it working. I am using Windows 10 with RStudio 2024.04.2 Build 764 and R 4.3.3. However, I frequently get a problem while trying to run the first R script (cleanup_germination_data.R): The script quits immediately without presenting a dialog to choose a file with the message:

Fehler in eval(ei, envir) : No germination data found in that directory

I found that this is a known issue for the choose.dir() command: https://github.com/rstudio/rstudio/issues/13078

As I do not want to downgrade my R installation, I am currently using the workaround to issue a file.choose() in the R console before starting the SPIRO Analysis scripts. Probably one could add this to the Troubleshooting tables?!

Best, Klaus

jonasoh commented 3 months ago

Hi Klaus, great to hear that you are up and running with SPIRO!

Thanks for the report -- I wasn't previously aware of this issue. I'll add it to the table!