It would be useful for Socrates to return an error earlier when the bowtie2 DB is not specified.
Cheers
/Alistair
::::::::::::::
./Socrates all --jvm_memory 40G -t 8 myFile.bam
Stratify BAM file myFile1.bam with option values:
threads = 8
min mapq = 5
min long sc length = 25
min avg soft clip base quality = 5
min aligned percent identity = 95
remove duplicates = true
Bowtie2 DB is required to perform alignment of FASTQ file.
jibsch
commented
10 years ago
Hi,
It would be useful for Socrates to return an error earlier when the bowtie2 DB is not specified.
Cheers /Alistair
:::::::::::::: ./Socrates all --jvm_memory 40G -t 8 myFile.bam
Stratify BAM file myFile1.bam with option values: threads = 8 min mapq = 5 min long sc length = 25 min avg soft clip base quality = 5 min aligned percent identity = 95 remove duplicates = true Bowtie2 DB is required to perform alignment of FASTQ file.