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jingshuw / SAVERX

R package for transfer learning of single-cell RNA-seq denoising
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Error in 'scanpy.api' #28

Open Chengmz opened 1 year ago

Chengmz commented 1 year ago

I meet the 'scanpy.api' error when I run SAVERX on my own samples

[1] "Input is a data matrix" [1] "Use a pretrained model: Yes" [1] "Data species is: Human" [1] "Pretrained weights file is: ./human_Tcells.hdf5" [1] "Model species is: Human" [1] "8850 genes mapped out of 9069" [1] "Gene names mapped, resulting file saved as: 1680935433.67681/tmpdata.rds" [1] "Reshaped file saved as: 1680935433.67681/tmpdata.mtx" [1] "Nonmissing indicator saved as: 1680935433.67681/tmpdata_nonmissing.txt" [1] "Data preprocessed ..." Error: ModuleNotFoundError: No module named 'scanpy.api'

Seems the 06/13/2022 update dosen't work What could I do with this error

MengyuanZhaoo commented 1 year ago

I met the same problem, have you solve it or which version of scanpy can work？

dzhao98 commented 1 year ago

Same here. Does anyone figure out a way to fix this?

DomenicoSkyWalker89 commented 10 months ago

Dear Jingshu Wang,

Thank you for mantaining SAVERX. Unforunately I got the same issue reported above, could you please help us to solve it?

Best,

Domenico

R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale: [1] LC_COLLATE=Italian_Italy.utf8 LC_CTYPE=Italian_Italy.utf8 LC_MONETARY=Italian_Italy.utf8 LC_NUMERIC=C LC_TIME=Italian_Italy.utf8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] SAVERX_1.0.2 reticulate_1.30

loaded via a namespace (and not attached): [1] compiler_4.2.2 here_1.0.1 Matrix_1.5-4.1 rprojroot_2.0.4 cli_3.6.1 tools_4.2.2 rstudioapi_0.14 Rcpp_1.0.10 grid_4.2.2 jsonlite_1.8.5 [11] rlang_1.1.1 png_0.1-8 lattice_0.20-45