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jinworks / CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
GNU General Public License v3.0
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can i take the spatial spot as singlecell to run scRNA group cellchat analysis #104

Open honghh2018 opened 4 months ago

honghh2018 commented 4 months ago

Hi developer, I had 8 10x spatial data, and i want to output the single cell(scRNA) plot, and then i want to runing the spatial spot like single cell, can i use it this way? is that right to running spatial data like single cell? Any advice would be appreciated.

Best, hanhuihong

honghh2018 commented 4 months ago

the spatial can not set the group health or diease group for 8 spatial sample to running the spatial interaction analysis object.list <- list(sample1= sample1, sample2 = sample2,sample3=sample3,sample4=sample4) can not set the sample1 and sample2 into group health, sample3 and sample4 into disease

is this had any solved for spatial group analysis? Best, hanhuihong

sqjin commented 3 months ago

@honghh2018 Did you check the tutorial here?