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jinyizju / V.PhyloMaker2

This package (an updated version of 'V.PhyloMaker') can generate a phylogenetic tree for vascular plants based on three different botanical nomenclature systems.
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Integration of WCVP #2

Open patrickweigelt opened 1 year ago

patrickweigelt commented 1 year ago

Hi Yi Jin,

Thanks a lot for your work on this. It would be really useful if there was a version of the tree using the taxonomy and species names of WCVP (World Checklist of Vascular Plants, Govaerts et al. 2022).

https://www.nature.com/articles/s41597-021-00997-6 https://powo.science.kew.org/about-wcvp

Best,

Patrick

jinyizju commented 1 year ago

Hi Yi Jin,

Thanks a lot for your work on this. It would be really useful if there was a version of the tree using the taxonomy and species names of WCVP (World Checklist of Vascular Plants, Govaerts et al. 2022).

https://www.nature.com/articles/s41597-021-00997-6 https://powo.science.kew.org/about-wcvp

Best,

Patrick

Hi Patrick,

Thanks for the information, we realized that we didn't provide a megatree based on POWO in V.PhyloMaker2. We can generate a megatree based on WCVP sometime next month (if not sooner).

Best,

Yi

patrickweigelt commented 1 year ago

Hi Yi,

Thanks a lot for your reply. This would be really useful. I will keep an eye on the repository to not miss when it comes out.

Best,

Patrick

jinyizju commented 1 year ago

Hi Yi,

Thanks a lot for your reply. This would be really useful. I will keep an eye on the repository to not miss when it comes out.

Best,

Patrick

Hi Patrick,

We have uploaded the megatree to https://github.com/megatrees/plant_20221214/blob/main/GBOTB.extended.WCVP.tre

We changed the plan to include this megatree in a soon to be published package, namely U.PhyloMaker. Please check if it is the megatree you want.

Merry Christmas,

Yi