TranscriptionFactory
commented
6 months ago - updated optimizeSLIDE to save SLIDE_LFs after running getTopFeatures; also saving the yaml file for each specific run (so that if someone wants to run SLIDEcv they can either use the yaml from a single run or use the original yaml thats used to run optimizeSLIDE to run CV for all the runs)
- updated SLIDEcv function to work after running optimizeSLIDE
- changed SLIDEcv output plots to be ggpubr (the nice ones with the stats)
- changed "gene_list_Zxxx" to be "feature_list_Zxxx"
- added args in CV functions so that if do_interacts is False then CV is done without interacts