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jishnu-lab / SLIDE

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main() into calcControlPerformance error #8

Open augusta-vincent opened 7 months ago

augusta-vincent commented 7 months ago

I'm getting this error when I try to run main() during the calcControlPerformance step (screenshot of error attached as well as Z and Y matrix): Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent In addition: Warning message: In readLines(con, warn = readLines.warn) : incomplete final line found on '/ix/cigcore/proj/hinterleitner/code/Augusta/metabolomics/SLIDE/new_totalmixed_slide.yaml'

traceback() 4: colnames<-(*tmp*, value = col_names) 3: pairwiseInteractions(sigK, z_matrix) 2: calcControlPerformance(z_matrix = z_matrix, y, SLIDE_res, niter = SLIDE_iter, condition = eval_type, loop_outpath) 1: SLIDE::main(yaml_path = yaml, sink_file = FALSE)

I had the same issue before the new update and I tried formatting my Y matrix in different ways including vectorizing it with no sample names but I haven't had any luck so far.

Screenshot 2024-02-08 135523

peak_table_neg_metadata (1).csv filtered_peak_table_mixed_input.csv