Open lwebercoralgirl opened 6 years ago
There will be a file named "KEGG_orthology2pathway.txt" under "FMAP_data" directory which includes the links between KEGG orthology and pathway. It will be helpful to select orthologies involved in your interesting pathway and generate sub-matrix table from the output of "FMAP_table.pl". Thanks.
Hello!
I would like to make a heatmap of the abundances of KOs that are linked to the significantly enriched pathways across all of my samples. Is there a way to do this using FMAP? For example, if the photosynthesis pathway is enriched across a sample group, would it be possible to link the pathway back to the KO's used to construct that pathway and then construct a data matrix of those abundances?
Thanks for your time!