Dealing with Paired End Files

jiwoongbio / FMAP

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

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Dealing with Paired End Files #14

Open SayanNanda opened 5 years ago

SayanNanda commented 5 years ago

Is there any method in place to do the FMAP_mapping.pl step for paired end fastq files? Is giving both the files as parameters for the perl script sufficient or is there any other way to go about this?

jiwoongbio commented 4 years ago

"FMAP_mapping.pl" does not provide the function considering paired-end read information. If you have done de novo metagenome assembly, I recommend to use "FMAP_assembly.pl" instead.