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jiwoongbio / FMAP

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
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Getting direction (log2foldchange) of significantly different pathways and operons #8

Open lwebercoralgirl opened 6 years ago

lwebercoralgirl commented 6 years ago

Hello!

I was wondering if there was a way to obtain the direction (log2foldchange value) of the significantly different enriched pathways that are revealed from the FMAP_pathway.pl command. Is there a way to do this using the FMAP_module.pl command to?

Thanks!

jiwoongbio commented 6 years ago

Hello,

There is a new release where FMAP_pathway.pl and FMAP_module.pl provide the up and down-regulated gene (orthology) counts as well. Thank you!

Best Regards, Jiwoong

On Tue, Feb 27, 2018 at 8:24 AM, lwebercoralgirl notifications@github.com wrote:

Hello!

I was wondering if there was a way to obtain the direction (log2foldchange value) of the significantly different enriched pathways that are revealed from the FMAP_pathway.pl command. Is there a way to do this using the FMAP_module.pl command to?

Thanks!

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lwebercoralgirl commented 6 years ago

Wonderful! Thank you! Best, Laura