Error running VAMP_database.feature.pl

jiwoongbio / VAMPr

VAriant Mapping and Prediction of antimicrobial resistance

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Error running VAMP_database.feature.pl #1

Open cedwardson4 opened 3 years ago

cedwardson4 commented 3 years ago

Hi, I have run into an error when running the following: perl ./VAMP_database.feature.pl Use of uninitialized value $end in join or string at ./VAMP_database.feature.pl line 78, <$reader> line 54314339.

I have checked that it successfully downloads the uniprot_sprot.xml.gz file (md5sum correct) but that is as far as it gets before this error.

Thanks, Christian

zhanxw commented 3 years ago

It is likely that your Perl version and required Perl libraries are missing. Can you check again?