I tried to run optitype from galaxy repository and got this error:
Traceback (most recent call last):
File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/bin/OptiTypePipeline.py", line 231, in <module>
config = configparser.ConfigParser(os.environ)
File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 639, in __init__
self._read_defaults(defaults)
File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 1222, in _read_defaults
self.read_dict({self.default_section: defaults})
File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 752, in read_dict
raise DuplicateOptionError(section, key, source)
configparser.DuplicateOptionError: While reading from '<dict>': option 'npm_config_prefix' in section 'DEFAULT' already exists
Hello!
I tried to run optitype from galaxy repository and got this error: