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jj-umn / galaxytools

Galaxy Tool wrappers
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latest update of optitype fails with an error II #4

Open dining-philosopher opened 3 years ago

dining-philosopher commented 3 years ago

Hello!

I tried to run optitype from galaxy repository and got this error:

Traceback (most recent call last):
  File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/bin/OptiTypePipeline.py", line 231, in <module>
    config = configparser.ConfigParser(os.environ)
  File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 639, in __init__
    self._read_defaults(defaults)
  File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 1222, in _read_defaults
    self.read_dict({self.default_section: defaults})
  File "/home/transgen/galaxy/database/dependencies/_conda/envs/__optitype@1.3.5/lib/python3.9/configparser.py", line 752, in read_dict
    raise DuplicateOptionError(section, key, source)
configparser.DuplicateOptionError: While reading from '<dict>': option 'npm_config_prefix' in section 'DEFAULT' already exists