Autophase not found?

[Jmegan042]

Hello,

Perhaps it has been resolved, although I have not found where or how, but the autophase command that according to the docs should have been under ng.proc_autophase.autops does not exist. Has it been moved, disabled, or otherwise abandoned for better options?

[jjhelmus]

ng.proc_autophase.autops should work if nmrglue is imported as ng. This feature was added to nmrglue after the last release (v0.5) and therefore is not available unless you install nmrglue from the GitHub source. Have you done this?

[Jmegan042]

At the punishment of sounding like an idiot, I do not have 0.5. It seems that I installed 0.4, but when I attempted to find the latest version, I can't seem to locate it in the google download page?

I have also tried to download straight from the github page and attempted to execute the setup.py program. However, It seems to be angry with me. I am getting an error where an exception has occurred.

"option -f not recognized"

Full Traceback:

---

GetoptError Traceback (most recent call last) //anaconda/lib/python3.5/distutils/fancy_getopt.py in getopt(self, args, object) 232 try: --> 233 opts, args = getopt.getopt(args, short_opts, self.long_opts) 234 except getopt.error as msg:

//anaconda/lib/python3.5/getopt.py in getopt(args, shortopts, longopts) 94 else: ---> 95 opts, args = do_shorts(opts, args[0][1:], shortopts, args[1:]) 96

//anaconda/lib/python3.5/getopt.py in do_shorts(opts, optstring, shortopts, args) 194 opt, optstring = optstring[0], optstring[1:] --> 195 if short_has_arg(opt, shortopts): 196 if optstring == '':

//anaconda/lib/python3.5/getopt.py in short_hasarg(opt, shortopts) 210 return shortopts.startswith(':', i+1) --> 211 raise GetoptError(('option -%s not recognized') % opt, opt) 212

GetoptError: option -f not recognized

During handling of the above exception, another exception occurred:

DistutilsArgError Traceback (most recent call last) //anaconda/lib/python3.5/distutils/core.py in setup(**attrs) 133 try: --> 134 ok = dist.parse_command_line() 135 except DistutilsArgError as msg:

//anaconda/lib/python3.5/distutils/dist.py in parse_command_line(self) 463 parser.set_aliases({'licence': 'license'}) --> 464 args = parser.getopt(args=self.script_args, object=self) 465 option_order = parser.get_option_order()

//anaconda/lib/python3.5/distutils/fancy_getopt.py in getopt(self, args, object) 234 except getopt.error as msg: --> 235 raise DistutilsArgError(msg) 236

DistutilsArgError: option -f not recognized

During handling of the above exception, another exception occurred:

SystemExit Traceback (most recent call last)

in () 44 'nmrglue.util'], 45 package_data={ ---> 46 'nmrglue': ['fileio/tests/data/_.f_', 'fileio/tests/data/_.dir/_']}, 47 ) 48 //anaconda/lib/python3.5/distutils/core.py in setup(**attrs) 134 ok = dist.parse_command_line() 135 except DistutilsArgError as msg: --> 136 raise SystemExit(gen_usage(dist.script_name) + "\nerror: %s" % msg) 137 138 if DEBUG: SystemExit: usage: **main**.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: **main**.py --help [cmd1 cmd2 ...] or: **main**.py --help-commands or: **main**.py cmd --help error: option -f not recognized

[jjhelmus]

Google code shut down a year or so ago so the links to the 0.5 release is on the GitHub releases. I'll update the INSTALL.txt file to point to the new location.

What command are you using to install from source? python setup.py install should be sufficient.

[Jmegan042]

Thanks for the help, I was attempting to execute the setup.py, not run the install. Still getting used to it all.

After this fix, I was able to run the autophase option. Great addition. Thanks for the help.

[jjhelmus]

Glad I could help. I updated the links in the INSTALL.TXT file with a link to the GitHub releases.