Swapped --states-present option with --frequency option (and made StatesPresent the default encoding for NEXUS output) and added support for --long-table option to generate a long-form collation table with rows consisting of (taxon, character, state, value) tuples.
Swapped
--states-presentoption with--frequencyoption (and made StatesPresent the default encoding for NEXUS output) and added support for--long-tableoption to generate a long-form collation table with rows consisting of (taxon, character, state, value) tuples.