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jjti
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repp
repository-based plasmid design
GNU General Public License v2.0
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Bump addressable from 2.6.0 to 2.8.1 in /docs
#68
dependabot[bot]
opened
2 years ago
0
Bump tzinfo from 1.2.5 to 1.2.10 in /docs
#67
dependabot[bot]
opened
2 years ago
0
Bump nokogiri from 1.10.3 to 1.13.6 in /docs
#66
dependabot[bot]
opened
2 years ago
0
Bump nokogiri from 1.10.3 to 1.13.4 in /docs
#65
dependabot[bot]
closed
2 years ago
1
Bump nokogiri from 1.10.3 to 1.13.3 in /docs
#64
dependabot[bot]
closed
2 years ago
1
Bump nokogiri from 1.10.3 to 1.12.5 in /docs
#63
dependabot[bot]
closed
2 years ago
1
Bump addressable from 2.6.0 to 2.8.0 in /docs
#62
dependabot[bot]
closed
2 years ago
1
Bump nokogiri from 1.10.3 to 1.11.5 in /docs
#61
dependabot[bot]
closed
3 years ago
1
Bump rake from 12.3.2 to 12.3.3 in /docs
#60
dependabot[bot]
opened
4 years ago
0
Bump nokogiri from 1.10.3 to 1.10.8 in /docs
#59
dependabot[bot]
closed
3 years ago
1
Bump rubyzip from 1.2.3 to 2.0.0 in /docs
#58
dependabot[bot]
opened
4 years ago
0
Bump nokogiri from 1.10.3 to 1.10.4 in /docs
#57
dependabot[bot]
closed
4 years ago
1
fix docs auto-generator
#56
jjti
closed
5 years ago
1
flag for Genbank file output
#55
jjti
opened
5 years ago
0
Refactor backbone digestion
#54
jjti
closed
5 years ago
0
Fix FWD design
#53
jjti
closed
5 years ago
0
debug feature engineering test case
#52
jjti
closed
5 years ago
0
flag for ls sequence to specify that it's circular
#51
jjti
closed
5 years ago
0
flag for forcing solutions using user defined backbone
#50
jjti
opened
5 years ago
0
Found solutions are more expensive than synthesizing the insert
#49
jjti
closed
5 years ago
1
add enzyme and cutsite to the output payload
#48
jjti
closed
5 years ago
0
make the ntthal calculation aboslute
#47
jjti
closed
5 years ago
0
Add gaps to mismatch/identity calculation
#46
jjti
closed
5 years ago
0
sequence/feature design without a specified backbone
#45
jjti
opened
5 years ago
1
fix cross over primer sequence for pcr fragments
#44
jjti
closed
5 years ago
0
blast match direction effects
#43
jjti
closed
5 years ago
0
add output to genbank
#42
jjti
closed
5 years ago
0
add warnings for hairpins in assembly fragments
#41
jjti
closed
5 years ago
0
filter -> include,exclude
#40
jjti
closed
5 years ago
0
fix app commands
#39
jjti
closed
5 years ago
0
experiment with embedding the blast databases and root settings file in the binary
#38
jjti
closed
5 years ago
0
if ordering as a synthetic vector is cheapest option, return that as a solution
#37
jjti
closed
5 years ago
0
vectors should be linearized if returned from blast of vector fragments
#36
jjti
closed
5 years ago
0
make queryDatabases concurrent
#35
jjti
closed
5 years ago
0
accept Genbank format for 'defrag vector'
#34
jjti
closed
5 years ago
0
add error handling for excessively large fragments/genes
#33
jjti
closed
5 years ago
1
feature based reverse engineering
#32
jjti
opened
5 years ago
0
fix synthesis cost estimate
#31
jjti
closed
5 years ago
1
break in assembly.add() if past one seq length beyond start
#30
jjti
closed
5 years ago
1
fix time and cost formatting
#29
jjti
closed
5 years ago
0
hairpins in overlap regions
#28
jjti
closed
5 years ago
1
use /tmp and or TMPDIR
#27
jjti
closed
5 years ago
1
limitations
#26
jjti
closed
5 years ago
0
add igem repository
#25
jjti
closed
5 years ago
0
backlog
#24
jjti
opened
5 years ago
0
support for backbones
#23
jjti
closed
5 years ago
0
allow primer shifting/optimization in large existing node overlaps
#22
jjti
closed
5 years ago
0
fix off-target checking so it checks the actual parent database
#21
jjti
closed
5 years ago
1
allow embedding of non-homology sequence in primers (<8bp)
#20
jjti
closed
5 years ago
1
don't filter free fragments in blast.filter
#19
jjti
closed
5 years ago
0
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