Open kalimero0411 opened 3 years ago
Try editing the QMAX
#define in fqz_comp.c to 128 instead of 64.
It could auto-detect, but fqzcomp was written in an era of Illumina data and it's not really a production worthy tool (more of a research project).
I have updated the fqzcomp models for CRAM 3.1 so I really ough to backport that work here and release a new fqzcomp.
I used
fqzcomp -n2 -s4+ -q1
on PacBio HiFi (Sequel II CSS) fastq sequences and recieved (fqzcomp v4.6):The unique charaters in the quality scores of the first 10 sequences are:
The only characters missing are 0,1 and 2:
Is there an a way to compress this data with fqzcomp? Thank you