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jkbonfield / io_lib

Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
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current master does not build with current instructions #19

Closed maarten-k closed 5 years ago

maarten-k commented 5 years ago

The current instructions do not take into account a separate htscodecs repo. I was able to to build with: 

git clone git@github.com:jkbonfield/io_lib.git
cd io_lib
git clone git@github.com:jkbonfield/htscodecs.git
cd htscodecs
autoreconf -i
cd ..
autoreconf -i
./configure 
make
jkbonfield commented 5 years ago

Thanks for the report. I'll fix this.

It's better to either use git clone -r or to use git submodule update --init to get the htscodecs submodule in place.

As for the `autoreconf`` bits, I provide a bootstrap script that does this for you so again that should be mentioned in the README.

Thanks.