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jkimlab / DESCHRAMBLER

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Segmentation Faults #1

Closed ralanharris closed 3 years ago

ralanharris commented 6 years ago

Make runs through without errors, but I get segmentation faults from the following programs:

createGenomeFile makeConservedSegments orthoBlocksToOrders outgroupSegsToOrders deschrambler

The seg faults occur even if I just run the program without any parameters. Other programs give usage information if I run them without any parameters.

I am running on a x86_64 system with CentOS 6.6. I have tried gcc versions 4.9.4 and 6.3.0. Do you have any idea what I need to change to correctly compile on this system? Alternatively, could you tell me the OS and gcc version that you used so I can try to replicate that?

Thanks,

Alan

jkimlab commented 6 years ago

Sorry for the problem. We tested our code on a CentOS 6.5 and 6.9 with gcc 4.8.5. If you do not provide parameters, that may the reason of causing the segmentation faults. Please try again. Thanks.

xuyuannnn commented 3 years ago

I meet the same preblem: It tells me that: /bin/sh: line 1: 30026 Segmentation fault /data/home/xuyuan/biosoft/D/DESCHRAMBLER/code/makeBlocks/createGenomeFile config.file Conserved.Segments > Genomes.Order make: *** [Makefile:57: Genomes.Order] Error 139

the same preblem to following scripts: createGenomeFile makeConservedSegments orthoBlocksToOrders outgroupSegsToOrders

so , Is there a compilation error? What can I do about it? my gcc version is 4.8.5

thanks