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jkimlab / DESCHRAMBLER

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Possiblitiy of working Progressive Cactus allignments with DESCHRAMBLER #17

Closed Alchimic007 closed 8 months ago

Alchimic007 commented 8 months ago

Hello,

Just wanted to ask whether it is possible to use Progressive Cactus (https://github.com/ComparativeGenomicsToolkit/cactus) alignments which are in .hal format (https://cglgenomics.ucsc.edu/data/cactus/) with DESCHRAMBLER, and if it is possible then is there some algorithm for that.

Thank you.

jkimlab commented 8 months ago

Sorry, the format is not supported.

On Oct 23, 2023, at 8:48 PM, Alchimic007 @.***> wrote:

Hello,

Just wanted to ask whether it is possible to use Progressive Cactus (https://github.com/ComparativeGenomicsToolkit/cactus) alignments which are in .hal format (https://cglgenomics.ucsc.edu/data/cactus/) with DESCHRAMBLER, and if it is possible then is there some algorithm for that.

Thank you.

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Alchimic007 commented 8 months ago

Thank you